PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018722P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 275aa    MW: 31943.3 Da    PI: 10.2685
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018722P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.42.5e-1526115286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt +++ +Li a  +++ +l+rg+l+ ++W+e+++++     ++++f r+++qCk++++ l+++yk +k++ ++   e +  +p+f+ l+
  MELO3C018722P1  26 WTFDHTSTLIHAWGQRHLDLNRGSLRHKHWQEIADAVnsshgHDKKFFRTAIQCKNRIDTLKRKYKIEKARIQESGGEYVCAWPFFSCLD 115
                     ****************************************999***************************99998889999*****9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-2124116No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQKPRRNHHC RLPLMPSTVP LREDSWTFDH TSTLIHAWGQ RHLDLNRGSL RHKHWQEIAD  60
AVNSSHGHDK KFFRTAIQCK NRIDTLKRKY KIEKARIQES GGEYVCAWPF FSCLDDLIGN  120
SHKASTSVSV SNSQSSPVTT PRLSLFSKVP VAPRSVIKKR RSTHVYRSFC DSYLRRDVNL  180
NEDEGKDGLE SDNSLSSSSF KDREVGYRKL AEAIRTITDI YERVEAEKQR QVVELEMQRM  240
QFTKDLEYQR MQLLLDIHLK FQKIKRARRA SEAG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455302.10.0PREDICTED: uncharacterized protein LOC103495499
TrEMBLA0A0A0K3T31e-175A0A0A0K3T3_CUCSA; Uncharacterized protein
STRINGGLYMA13G36650.11e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.14e-58sequence-specific DNA binding transcription factors